PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00984g00118.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 536aa    MW: 60699.4 Da    PI: 6.5712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00984g00118.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-0789111427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C f++  G+C+ G+rC+F Hgp
  Peaxi162Scf00984g00118.1  89 VPCYFYFN-GYCNKGERCSFLHGP 111
                               69******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.39635IPR000571Zinc finger, CCCH-type
PfamPF156638.1E-12666No hitNo description
SMARTSM003560.0092734IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.6293763IPR000571Zinc finger, CCCH-type
SMARTSM003561.33962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.92585112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-486111IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-490111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-690113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEEQLQKRNT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CLNPTCAFRH  60
APLENRAETS SGSAPAPNKS AVLVNKTNVP CYFYFNGYCN KGERCSFLHG PDDGTPAWKS  120
SKITSGIPDV PTAEKKTSAG SEPGPAPVEK HPNSSETGSE AVTHEYIKSK VDLHSMTNNF  180
GEPSASPETS GSPSEEATVV RSDSLVPAEA FTQGGSHLSP DRSSDEEVED NVEREEWLES  240
SPGFDVLVGD RVEGLSQEDD QKYLVHPEME DREPGEQFAG YDFEILEYDD AYPVMRNVSE  300
EELDKSYQSV VNQDINEYES VREILIPAHG RQQFPWKRKL PTELALRGRG NVDLRDLLKK  360
RRVIDDPLNH FSRRRDLSRL NAHEQGRDRH HQPQGSRWMP RRLSSKVESS ASFSRVKDDS  420
LLERANHQRR LRQFQGSSYR QHFKNSKWGR SRAFANEAPR RMVSRKRMTE VPMIFSAPKS  480
LAQIKEGKEK VGEDINSFER TGPSGGSERE DFLGPKPLSE ILRDKRRLGS VVSFCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589189.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLM1BUN90.0M1BUN9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000532420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911